Here's another theory: Elliot is God; or, at least stuck in the prison of his mind, where he is God. Without a strict daily regiment, chaos takes over (fsociety). There's lots of evidence supporting this.the theory that elliot is in prison or a mental hospital in season 2 is pretty interesting. his "routine" consists of stuff you would do in jail : same place for all your meals, going to the rec area and sitting on bleachers watching people play ball for afternoon rec time, no access to computers, the whole routine of washing/bed making/etc, and getting phone access in short allotments. Would also put a whole new spin on his visit by gideon.
Ie: (from episode one) "But they might as well be called Evil Corp. In fact, after a thorough, intensive self-reprogramming, that's all my mind hears, sees or reads when they pop up in my world. Krista would have a shit fit if she knew I did that. But that's what they are..."
Literally everyone and everything in the show refers to "E Corp" as "Evil Corp," even when Eliot isn't around, which is Eliot's programming. Eliot (God) is buried in layers of these self-reprogrammings. He'd rather live in his self-constructed maze and/or let chaos take over than face and heal his pain.
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